MENLO PARK, Calif.,
July 23, 2020 /PRNewswire/ --
Specialized cells at the edge of growing skin cancers reduce immune
response, Stanford researchers have
reported in Cell. The study, available in print today,
combined several techniques to analyze and precisely map the tumor
microenvironment of squamous cell carcinoma (a common skin cancer)
with single-cell level detail.
The team of Stanford researchers,
led by Paul Khavari, MD, PhD,
professor and chair of dermatology and the Carl J. Herzog Professor
in Dermatology in the School of Medicine, combined single-cell
resolution Multiplexed Ion Beam Imaging (MIBI™) with spatial
transcriptomics and RNA sequencing to analyze a series of human
cutaneous squamous cell carcinoma samples, along with matched
normal skin. The aim was to understand the spatial context of tumor
biology and identify cell types that drive drug resistance.
"We wanted to obtain a high-resolution view of the tumor
microenvironment through a multi-pronged approach. Until our study,
we had no idea how diverse of a cellular composition was present
within this disease," explains Andrew
Ji, MD, Clinician, Post Doctoral Fellow at Stanford Medical
School and co-lead author. "We leveraged single-cell RNA-sequencing
to define the cell types present, but this required dissociating
the samples, thereby losing their spatial and biological context.
Without this critical piece of the puzzle, we cannot understand how
these cells could potentially influence their surrounding
neighbors."
IONpath's high definition spatial proteomics platform, MIBI,
provides quantitative protein expression on a single cell basis,
with spatial content. This provides researchers with the ability to
see not only what cells and biomarkers are present, but also where
they are located in relation to each other.
"The high-throughput ability to define diverse cell types
through single-cell RNA-sequencing has highlighted challenges with
traditional imaging and staining methods," says Sizun Jiang, PhD,
co-lead author and Post Doctoral Fellow, Dept. of Microbiology and
Immunology, Stanford University School
of Medicine. "IONpath's next-generation MIBI platform enabled us to
obtain a breadth of markers simultaneously and at single-cell
resolution to place these diverse cells in their native context and
understand what behaviors they may be engaging in. We hope that
this leads to not only an improved understanding of tumor biology,
but a new framework for profiling and understanding other human
diseases."
The researchers are now using this multi-omics approach to
investigate cancer types beyond squamous cell carcinomas to provide
novel insights and guide new cancer therapies that activate
the immune system and use it in the fight against cancer.
About IONpath, Inc.
IONpath, Inc. is delivering on the
promise of spatial proteomics to accelerate medical discovery and
improve human health. The company's MIBIscope™ System utilizes
Multiplexed Ion Beam Imaging (MIBI™) technology which
represents a transformative step in tissue imaging by
simultaneously multiplexing up to 40 markers with specificity down
to a single cell. Leading research institutes, biotech and
pharmaceutical companies are using the MIBIscope in
immuno-oncology, immunology and neuroscience research where
quantitative multiplexed phenotypic mapping is needed. In addition
to the MIBIscope™ System enhanced with MIBItracker™, IONpath
empowers the research and development initiatives of academic,
biotech and pharmaceutical partners through its comprehensive
Research Services division.
Visit www.ionpath.com to learn more.
©2020 IONpath, Inc. All rights reserved. IONpath® is a
registered trademark and MIBI™ & MIBIscope™ are trademarks of
IONpath INC. For Research Use Only. Not for diagnostic
use.
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